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SWcommon_ref.h File Reference
#include <sys/time.h>
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Functions

void readProtein (ProteinFile *fprotein, aa_t *protein, int size)
 
void printProtein (aa_t *p, int size)
 
void printProteinMatch (aa_t *p, int size, int begin, int end)
 
double currentTime ()
 

Detailed Description

Common C reference definitions and utilities for the Smith-Waterman algorihtm.

Author
Javier Fresno
Date
Jun 2013

Definition in file SWcommon_ref.h.

Function Documentation

double currentTime ( )

Current time in seconds.

Definition at line 106 of file SWcommon_ref.c.

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void printProtein ( aa_t p,
int  size 
)

Print the protein to stdout

Definition at line 73 of file SWcommon_ref.c.

void printProteinMatch ( aa_t p,
int  psize,
int  begin,
int  end 
)

Print the protein to stdout

Definition at line 88 of file SWcommon_ref.c.

void readProtein ( ProteinFile fprotein,
aa_t protein,
int  size 
)

Read the protein from a file.

Definition at line 46 of file SWcommon_ref.c.