Hitmap 1.3
|
Go to the source code of this file.
Functions | |
void | readProtein (ProteinFile *fprotein, aa_t *protein, int psize) |
void | printProtein (aa_t *p, int psize) |
void | printProteinMatch (aa_t *p, int psize, int begin, int end) |
double | currentTime () |
Common C reference definitions and utilities for the Smith-Waterman algorihtm.
Definition in file SWcommon_ref.c.
double currentTime | ( | ) |
Current time in seconds.
Definition at line 106 of file SWcommon_ref.c.
void printProtein | ( | aa_t * | p, |
int | size | ||
) |
Print the protein to stdout
Definition at line 73 of file SWcommon_ref.c.
void printProteinMatch | ( | aa_t * | p, |
int | psize, | ||
int | begin, | ||
int | end | ||
) |
Print the protein to stdout
Definition at line 88 of file SWcommon_ref.c.
void readProtein | ( | ProteinFile * | fprotein, |
aa_t * | protein, | ||
int | size | ||
) |
Read the protein from a file.
Definition at line 46 of file SWcommon_ref.c.