55 int res = fscanf(fprotein->
file,
"%c",&ch);
59 rewind(fprotein->
file);
63 aa_t aa = char2AA(ch);
77 for(i=1; i<psize+1; i++){
78 printf(
"%c",AA2char(p[i]));
92 for(i=1; i<psize+1; i++){
94 if(i>begin && i<end+1)
95 printf(
"%c", (
char) toupper(AA2char(p[i])));
97 printf(
"%c",AA2char(p[i]));
108 gettimeofday(&tim, NULL);
109 return (
double) tim.tv_sec + ((double)tim.tv_usec / (1000*1000) );
void printProteinMatch(HitTile_aa_t p, int begin, int end)
void readProtein(ProteinFile *fprotein, HitTile_aa_t *protein, int psize)
void printProtein(HitTile_aa_t p, int offset, int psize)