Hitmap 1.3
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SWcommon_hit.h File Reference
#include <hitmap.h>
#include "SWcommon.h"
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Functions

 hit_tileNewType (aa_t)
 
 hit_tileNewType (h_t)
 
void readProtein (ProteinFile *fprotein, HitTile_aa_t *protein, int size)
 
void printProtein (HitTile_aa_t p, int offset, int size)
 
void printProteinMatch (HitTile_aa_t p, int begin, int end)
 

Detailed Description

Common hitmap definitions and utilities for the Smith-Waterman algorihtm.

Author
Javier Fresno
Date
Jun 2013

Definition in file SWcommon_hit.h.

Function Documentation

hit_tileNewType ( aa_t  )

Hitmap type for the amino acid.

Hitmap type for the traceback matrix.

hit_tileNewType ( h_t  )

Hitmap type of the H and PAM matrices

void printProtein ( HitTile_aa_t  p,
int  offset,
int  size 
)

Print the protein to stdout

Definition at line 78 of file SWcommon_hit.c.

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void printProteinMatch ( HitTile_aa_t  p,
int  begin,
int  end 
)

Print the protein to stdout

Definition at line 90 of file SWcommon_hit.c.

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void readProtein ( ProteinFile fprotein,
HitTile_aa_t *  protein,
int  psize 
)

Read the protein from a file.

Definition at line 48 of file SWcommon_hit.c.

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