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<title>A systems biology approach reveals a link between systemic cytokines and skeletal muscle energy metabolism in a rodent smoking model and human COPD</title>
<creator>Davidsen, Peter K.</creator>
<creator>Herbert, Jhon M.</creator>
<creator>Antczak, Kim</creator>
<creator>Ferrer, Elisabet</creator>
<creator>Peinado, Víctor I.</creator>
<creator>González Martínez, Constancio</creator>
<creator>Roca, Josep</creator>
<creator>Egginton, Stuart</creator>
<creator>Barberá, Joan A.</creator>
<creator>Falciani, Francesco</creator>
<subject>EPOC</subject>
<description>Producción Científica</description>
<description>Background: A relatively large percentage of patients with chronic obstructive pulmonary disease (COPD) develop&#xd;
systemic co-morbidities that affect prognosis, among which muscle wasting is particularly debilitating. Despite&#xd;
significant research effort, the pathophysiology of this important extrapulmonary manifestation is still unclear. A key&#xd;
question that remains unanswered is to what extent systemic inflammatory mediators might play a role in this&#xd;
pathology.&#xd;
Cigarette smoke (CS) is the main risk factor for developing COPD and therefore animal models chronically exposed&#xd;
to CS have been proposed for mechanistic studies and biomarker discovery. Although mice have been successfully&#xd;
used as a pre-clinical in vivo model to study the pulmonary effects of acute and chronic CS exposure, data suggest&#xd;
that they may be inadequate models for studying the effects of CS on peripheral muscle function. In contrast,&#xd;
recent findings indicate that the guinea pig model (Cavia porcellus) may better mimic muscle wasting.&#xd;
Methods: We have used a systems biology approach to compare the transcriptional profile of hindlimb skeletal&#xd;
muscles from a Guinea pig rodent model exposed to CS and/or chronic hypoxia to COPD patients with muscle&#xd;
wasting.&#xd;
Results: We show that guinea pigs exposed to long-term CS accurately reflect most of the transcriptional changes&#xd;
observed in dysfunctional limb muscle of severe COPD patients when compared to matched controls. Using network&#xd;
inference, we could then show that the expression profile in whole lung of genes encoding for soluble inflammatory&#xd;
mediators is informative of the molecular state of skeletal muscles in the guinea pig smoking model. Finally, we show&#xd;
that CXCL10 and CXCL9, two of the candidate systemic cytokines identified using this pre-clinical model, are indeed&#xd;
detected at significantly higher levels in serum of COPD patients, and that their serum protein level is inversely&#xd;
correlated with the expression of aerobic energy metabolism genes in skeletal muscle.&#xd;
Conclusions: We conclude that CXCL10 and CXCL9 are promising candidate inflammatory signals linked to the&#xd;
regulation of central metabolism genes in skeletal muscles. On a methodological level, our work also shows that a&#xd;
system level analysis of animal models of diseases can be very effective to generate clinically relevant hypothesis.</description>
<date>2014-11-04</date>
<date>2014-11-04</date>
<date>2014</date>
<type>info:eu-repo/semantics/article</type>
<identifier>Genome Medicine 2014, 6:59</identifier>
<identifier>1756-994X</identifier>
<identifier>http://uvadoc.uva.es/handle/10324/6892</identifier>
<identifier>10.1186/s13073-014-0059-5</identifier>
<identifier>Genome Medicine</identifier>
<identifier>59</identifier>
<language>eng</language>
<rights>info:eu-repo/semantics/openAccess</rights>
<rights>http://creativecommons.org/licenses/by-nc-nd/4.0/</rights>
<rights>Attribution-NonCommercial-NoDerivatives 4.0 International</rights>
<publisher>BioMed Central</publisher>
</thesis></metadata></record></GetRecord></OAI-PMH>