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    Por favor, use este identificador para citar o enlazar este ítem:https://uvadoc.uva.es/handle/10324/65823

    Título
    Efficient simulation of stochastic chemical kinetics with the Stochastic Bulirsch-Stoer extrapolation method
    Autor
    Székely, Tamás
    Burrage, Kevin
    Zygalakis, Konstantinos C
    Barrio Solórzano, ManuelAutoridad UVA Orcid
    Año del Documento
    2014
    Editorial
    BioMed Central
    Documento Fuente
    BMC Systems Biology, Volume 8, Pages 1-18
    Zusammenfassung
    Biochemical systems with relatively low numbers of components must be simulated stochastically in order to capture their inherent noise. Although there has recently been considerable work on discrete stochastic solvers, there is still a need for numerical methods that are both fast and accurate. The Bulirsch-Stoer method is an established method for solving ordinary differential equations that possesses both of these qualities. In this paper, we present the Stochastic Bulirsch-Stoer method, a new numerical method for simulating discrete chemical reaction systems, inspired by its deterministic counterpart. It is able to achieve an excellent efficiency due to the fact that it is based on an approach with high deterministic order, allowing for larger stepsizes and leading to fast simulations. We compare it to the Euler τ-leap, as well as two more …
    Revisión por pares
    SI
    DOI
    10.1186/1752-0509-8-71
    Version del Editor
    https://bmcsystbiol.biomedcentral.com/articles/10.1186/1752-0509-8-71
    Idioma
    spa
    URI
    https://uvadoc.uva.es/handle/10324/65823
    Tipo de versión
    info:eu-repo/semantics/publishedVersion
    Derechos
    openAccess
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    • DEP41 - Artículos de revista [109]
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